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PHD THESIS

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Antimicrobial resistant urinary tract infections:

Pharmacodynamic profiling of oral fosfomycin.

A thesis submitted for the degree of Doctor of Philosophy at Monash University in 2020

Department of Infectious Diseases, The Alfred and Central Clinical School, Monash University, Melbourne, Australia

Abstract

Urinary tract infections (UTIs) are one of the most common conditions for which antimicrobials are prescribed worldwide. This, in turn, represents a significant driver for the emergence of antimicrobial resistance (AMR) in the community. Therefore, the optimisation of UTI treatment is paramount for improved clinical outcomes and the preservation of the activity of antimicrobials for the future. 

 

Despite oral fosfomycin being recommended as a first-line agent in many international guidelines, the comprehensive pharmacodynamic profiling of fosfomycin efficacy in UTIs has never been done. Approaches to susceptibility testing and the licensed dose recommendations have remain unchanged since the 1970s.

 

This research program was undertaken to develop a preclinical in vitro model that mimics infections of the urinary bladder, simulate the dynamically changing antimicrobial concentrations and replicate the normal urodynamics of bladder filling and intermittent voiding. Furthermore, this model enables the study of pathogen response in the biomatrix of pooled human urine and the validation of a synthetic alternative. 

 

The key findings of this research are as follows. Fosfomycin demonstrated good activity against a range of Escherichia coli isolates, although treatment failure and emergence of resistance was not predicted by standard susceptibility testing and current clinical breakpoints. Fosfomycin activity against Klebsiella pneumoniae was limited, with this species having an almost universal presence of a fosfomycin-resistant subpopulation at baseline. When comparing different dosing and urinary exposures, compared to a single dose with average exposure, there was no improvement in fosfomycin efficacy against Enterobacterales when urinary concentrations were high, or prolonged following multiple administered doses. The in vitro testing environment was found to impact upon the activity of fosfomycin, with a reduced propensity for isolates to develop emergence of resistance when comparing pooled human urine and synthetic alternatives with nutrient-rich standard laboratory media. The activity against Pseudomonas aeruginosa in synthetic human urine was limited, with the majority of isolates demonstrating emergence of resistance that was promoted by the administration of multiple doses over 7-days of simulated therapy. In contrast, fosfomycin activity against Enterococcus spp. was reasonable, albeit bacteriostatic, without any emergence of resistance when tested in synthetic human urine. 

 

This research has contributed the in vitro data regarding fosfomycin susceptibility testing, spectrum of activity and clinical dosing recommendations. The development of the preclinical bladder infection model has proven to be a powerful tool for the pharmacodynamic profiling of oral fosfomycin for the treatment of UTIs. Furthermore, this research provides a strong basis for the future study of other antimicrobials to inform UTI-specific clinical breakpoints, optimised dosing schedules in human studies and for the study of new agents.

Publications during enrolment

First-author publications

 

Abbott IJ, Meletiadis J, Belghanch I, Wijma RA, Kanioura L, Roberts JA, Peleg AY, Mouton JW. Fosfomycin efficacy and emergence of resistance among Enterobacteriaceae in an in vitro dynamic bladder infection model. J Antimicrob Chemother. 2018 Mar 1;73(3):709-719. 

https://doi.org/10.1093/jac/dkx441

PMID: 29253153

 

Abbott IJ, Dekker J, van Gorp E, Wijma RA, Raaphorst MN, Klaassen CHW, Meletiadis J, Mouton JW, Peleg AY. Impact of bacterial species and baseline resistance on fosfomycin efficacy in urinary tract infections. J Antimicrob Chemother. 2020 Apr 1;75(4):988-996.

https://doi.org/10.1093/jac/dkz519

PMID: 31873748

 

Abbott IJ, van Gorp E, Wijma RA, Meletiadis J, Roberts JA, Mouton JW, Peleg AY. Oral fosfomycin efficacy with variable urinary exposures following single and multiple doses against Enterobacterales: the importance of heteroresistance for growth outcome. Antimicrob Agents Chemother. 2020 Feb 21;64(3):e01982-19. 

https://doi.org/10.1128/aac.01982-19

PMID: 31907184

 

Abbott IJ, van Gorp E, Wijma RA, Meletiadis J, Mouton JW, Peleg AY. Evaluation of pooled human urine and synthetic alternatives in a dynamic bladder infection in vitro model simulating oral fosfomycin therapy. J Microbiol Methods. 2020 Apr;171:105861. 

https://doi.org/10.1016/j.mimet.2020.105861

PMID: 32035114

 

Abbott IJ, van Gorp E, Wijma RA, Dekker J, Croughs PD, Meletiadis J, Mouton JW, Peleg AY. Efficacy of single and multiple oral doses of fosfomycin against Pseudomonas aeruginosa urinary tract infections in a dynamic in vitro bladder infection model. J Antimicrob Chemother. 2020 Jul 1;75(7):1879-1888.

https://doi.org/10.1093/jac/dkaa127

PMID: 32361749

 

Abbott IJ, van Gorp E, van der Meijden A, Wijma RA, Roberts JA, Mouton JW, Peleg AY. Oral fosfomycin treatment for enterococcal urinary tract infections in a dynamic in vitro model. Antimicrob Agents Chemother. 2020 May 21;64(6):e00342-20.

https://doi.org/10.1128/aac.00342-20

PMID: 32253214

 

Abbott IJ, Roberts JA, Meletiadis J, Peleg AY. Antimicrobial pharmacokinetics and preclinical in vitro models to support optimized treatment approaches for uncomplicated lower urinary tract infections. Expert Rev Anti Infect Ther. 2020 Nov 16:1-25. Epub ahead of print.

https://doi.org/10.1080/14787210.2020.1813567

PMID: 32820686

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Co-author publications

 

Gardiner BJ, Stewardson AJ, Abbott IJ, Peleg AY. Nitrofurantoin and fosfomycin for resistant urinary tract infections: old drugs for emerging problems. Aust Prescr. 2019 Feb;42(1):14-19. 

https://doi.org/10.18773/austprescr.2019.002

PMID: 30765904

 

Wijma RA, Huttner A, van Dun S, Kloezen W, Abbott IJ, Muller AE, Koch BCP, Mouton JW. Urinary antibacterial activity of fosfomycin and nitrofurantoin at registered dosages in healthy volunteers. Int J Antimicrob Agents. 2019 Oct;54(4):435-441.

https://doi.org/10.1016/j.ijantimicag.2019.07.018

PMID: 31382030

 

Ten Doesschate T, Abbott IJ, Willems RJL, Top J, Rogers MRC, Bonten MM, Paganelli FL. In vivo acquisition of fosfomycin resistance in Escherichia coli by fosA transmission from commensal flora. J Antimicrob Chemother. 2019 Dec 1;74(12):3630-32.

https://doi.org/10.1093/jac/dkz380

PMID: 31511878

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